Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11899167	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11903109	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17387292	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17387536	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1829364	0.82[EUR][1000 genomes]
rs35559425	0.84[EUR][1000 genomes]
rs4474828	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72897813	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72897827	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72898260	0.82[EUR][1000 genomes]
rs72898263	0.82[EUR][1000 genomes]
rs72899862	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72899866	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72899869	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72899900	0.86[AMR][1000 genomes]
rs72901703	0.86[AMR][1000 genomes]
rs72901708	0.86[AMR][1000 genomes]
rs72901711	0.86[AMR][1000 genomes]
rs72901714	0.86[AMR][1000 genomes]
rs72901723	0.86[AMR][1000 genomes]
rs72901724	0.86[AMR][1000 genomes]
rs72901730	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7423992	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2756334	chr2:141166521-141285622	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv875191	chr2:141218933-141268030	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
4	nsv459518	chr2:141218933-141282923	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv583191	chr2:141218933-141282923	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
6	nsv875192	chr2:141224542-141268030	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141261200-141264000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr2:141262000-141264200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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