Variant report
| Variant | rs72898260 |
|---|---|
| Chromosome Location | chr2:141178998-141178999 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10803583 | 1.00[ASN][1000 genomes] |
| rs11899167 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11900092 | 0.95[ASN][1000 genomes] |
| rs11903109 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs13018061 | 0.95[ASN][1000 genomes] |
| rs1518439 | 1.00[ASN][1000 genomes] |
| rs17387292 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17387536 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1829364 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35546150 | 1.00[ASN][1000 genomes] |
| rs4474828 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4954836 | 0.95[ASN][1000 genomes] |
| rs59982045 | 1.00[ASN][1000 genomes] |
| rs72894082 | 1.00[ASN][1000 genomes] |
| rs72894090 | 0.91[ASN][1000 genomes] |
| rs72896235 | 1.00[ASN][1000 genomes] |
| rs72896239 | 1.00[ASN][1000 genomes] |
| rs72896256 | 1.00[ASN][1000 genomes] |
| rs72897813 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72897827 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72898263 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72899862 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72899866 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72899869 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72901718 | 0.82[EUR][1000 genomes] |
| rs72901730 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754266 | chr2:141023643-141270786 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv875185 | chr2:141055080-141179257 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 3 | nsv875186 | chr2:141123496-141217244 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | esv2756334 | chr2:141166521-141285622 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
| 5 | nsv875187 | chr2:141170340-141237995 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:141173800-141187600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
