Variant report

Variant	rs72894082
Chromosome Location	chr2:141109524-141109525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10803583	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11900092	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13018061	0.95[ASN][1000 genomes]
rs1518439	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17477262	0.89[EUR][1000 genomes]
rs1829364	1.00[ASN][1000 genomes]
rs1968910	0.92[EUR][1000 genomes]
rs35546150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4954836	0.95[ASN][1000 genomes]
rs59982045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs649083	0.92[EUR][1000 genomes]
rs670617	0.92[EUR][1000 genomes]
rs72894090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72896235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898260	1.00[ASN][1000 genomes]
rs72898263	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141106200-141113600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:141106800-141112200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:141106800-141113000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:141107000-141111200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:141107000-141111400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:141107400-141113400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:141107600-141111600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr2:141109200-141109800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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