Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10803583	1.00[ASN][1000 genomes]
rs11899167	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11900092	0.95[ASN][1000 genomes]
rs11903109	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13018061	0.95[ASN][1000 genomes]
rs1518439	1.00[ASN][1000 genomes]
rs17387292	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17387536	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1829364	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35546150	1.00[ASN][1000 genomes]
rs4474828	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4954836	0.95[ASN][1000 genomes]
rs59982045	1.00[ASN][1000 genomes]
rs72894082	1.00[ASN][1000 genomes]
rs72894090	0.91[ASN][1000 genomes]
rs72896235	1.00[ASN][1000 genomes]
rs72896239	1.00[ASN][1000 genomes]
rs72896256	1.00[ASN][1000 genomes]
rs72897813	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72897827	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72898260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899862	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72899866	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72899869	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72901718	0.82[EUR][1000 genomes]
rs72901730	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2756334	chr2:141166521-141285622	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	nsv875187	chr2:141170340-141237995	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141173800-141187600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:141179800-141180600	Enhancers	Fetal Brain Female	brain
3	chr2:141179800-141181000	Enhancers	Fetal Brain Male	brain

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