Variant report
| Variant | rs6430924 |
|---|---|
| Chromosome Location | chr2:141325196-141325197 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:141323740..141325865-chr2:141332665..141335542,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11897270 | 1.00[CHD][hapmap] |
| rs13003828 | 1.00[CHD][hapmap] |
| rs1518440 | 1.00[CHD][hapmap] |
| rs1518443 | 1.00[CHD][hapmap] |
| rs1518444 | 1.00[CHD][hapmap] |
| rs17387292 | 1.00[CHD][hapmap] |
| rs17387536 | 1.00[CHD][hapmap] |
| rs1878741 | 1.00[CHD][hapmap] |
| rs1905922 | 1.00[YRI][hapmap] |
| rs41323147 | 1.00[CHD][hapmap] |
| rs41478345 | 1.00[CHD][hapmap] |
| rs522410 | 0.82[YRI][hapmap] |
| rs535615 | 1.00[MKK][hapmap];0.82[YRI][hapmap] |
| rs6747180 | 1.00[CHD][hapmap] |
| rs7422845 | 1.00[CHD][hapmap] |
| rs7565092 | 1.00[YRI][hapmap] |
| rs7604266 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv583192 | chr2:141310721-141350100 | Enhancers Weak transcription | Chromatin interactive regionmiRNA | n/a | inside rSNPs | n/a |
| 2 | nsv459529 | chr2:141321160-141350100 | Enhancers Weak transcription | Chromatin interactive regionmiRNA | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
