Variant report

Variant	rs535615
Chromosome Location	chr2:141365990-141365991
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16844517	1.00[YRI][hapmap]
rs1905922	0.82[YRI][hapmap]
rs288100	0.82[YRI][hapmap]
rs476139	0.82[AFR][1000 genomes]
rs478781	0.82[AFR][1000 genomes]
rs483113	0.82[AFR][1000 genomes]
rs490089	1.00[AFR][1000 genomes]
rs502908	0.93[AFR][1000 genomes]
rs522410	1.00[YRI][hapmap]
rs577574	0.87[AFR][1000 genomes]
rs6430924	1.00[MKK][hapmap];0.82[YRI][hapmap]
rs7560453	0.85[YRI][hapmap]
rs7565092	0.82[YRI][hapmap]
rs7604266	0.82[YRI][hapmap]
rs794037	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583193	chr2:141365171-141415043	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs535615	TRAT1	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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