Variant report

Variant	rs10169528
Chromosome Location	chr2:140942835-140942836
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10165294	1.00[AFR][1000 genomes]
rs10184582	0.91[AFR][1000 genomes]
rs13409080	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs13429206	0.86[AFR][1000 genomes]
rs1552437	1.00[CEU][hapmap]
rs16843615	0.93[EUR][1000 genomes]
rs16843673	1.00[CEU][hapmap]
rs17385549	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17385570	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17385695	0.80[EUR][1000 genomes]
rs17385709	0.80[EUR][1000 genomes]
rs17385716	0.80[EUR][1000 genomes]
rs17385930	1.00[CEU][hapmap]
rs17386226	1.00[CEU][hapmap]
rs17386351	1.00[CEU][hapmap]
rs17386834	1.00[CEU][hapmap]
rs17477150	1.00[CEU][hapmap]
rs17477171	1.00[CEU][hapmap]
rs17477276	1.00[CEU][hapmap]
rs17477437	1.00[CEU][hapmap]
rs7583997	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932690	chr2:140654234-140959013	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv875180	chr2:140735843-141004529	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv583188	chr2:140891843-140982918	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:140941200-140944200	Enhancers	Fetal Brain Male	brain
2	chr2:140942400-140943400	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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