Variant report

Variant	rs1338934
Chromosome Location	chr6:132726090-132726091
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RELA	chr6:132725411-132726679	GM18505	blood:	n/a	n/a
2	FOS	chr6:132725864-132726717	MCF10A-Er-Src	breast:	n/a	n/a
3	EBF1	chr6:132725649-132726706	GM12878	blood:	n/a	chr6:132726235-132726245 chr6:132726235-132726244
4	STAT3	chr6:132725989-132726165	MCF10A-Er-Src	breast:	n/a	chr6:132726025-132726034 chr6:132726026-132726035
5	FOS	chr6:132725845-132726711	MCF10A-Er-Src	breast:	n/a	n/a
6	BATF	chr6:132725365-132726168	GM12878	blood:	n/a	n/a
7	NFIC	chr6:132725231-132726114	GM12878	blood:	n/a	n/a
8	FOXM1	chr6:132725350-132726115	GM12878	blood:	n/a	n/a
9	FOS	chr6:132725858-132726175	MCF10A-Er-Src	breast:	n/a	n/a
10	EP300	chr6:132725497-132726713	GM12878	blood:	n/a	chr6:132726613-132726627
11	NFATC1	chr6:132725406-132726126	GM12878	blood:	n/a	n/a
12	MEF2A	chr6:132725272-132726814	GM12878	blood:	n/a	chr6:132726066-132726077
13	BATF	chr6:132725461-132726107	GM12878	blood:	n/a	n/a
14	FOS	chr6:132725868-132726131	MCF10A-Er-Src	breast:	n/a	n/a
15	MTA3	chr6:132725229-132726779	GM12878	blood:	n/a	n/a
16	RELA	chr6:132725363-132726678	GM12891	blood:	n/a	n/a
17	NFIC	chr6:132725198-132726813	GM12878	blood:	n/a	n/a
18	TBL1XR1	chr6:132725332-132726786	GM12878	blood:	n/a	n/a
19	RUNX3	chr6:132725289-132726192	GM12878	blood:	n/a	n/a
20	FOXM1	chr6:132725266-132726810	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
MOXD1	TF binding region

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1000848	0.86[ASN][1000 genomes]
rs1000849	0.86[ASN][1000 genomes]
rs12660839	0.84[ASN][1000 genomes]
rs12663764	0.86[ASN][1000 genomes]
rs1338936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338938	0.86[ASN][1000 genomes]
rs1538307	0.86[ASN][1000 genomes]
rs2153175	0.86[ASN][1000 genomes]
rs2185185	0.86[ASN][1000 genomes]
rs2211095	0.83[ASN][1000 genomes]
rs2327242	0.86[ASN][1000 genomes]
rs2327244	0.80[ASN][1000 genomes]
rs2876186	0.86[ASN][1000 genomes]
rs2876187	0.82[ASN][1000 genomes]
rs4377800	0.83[ASN][1000 genomes]
rs4489176	0.82[ASN][1000 genomes]
rs4515403	0.82[ASN][1000 genomes]
rs4529319	0.83[ASN][1000 genomes]
rs4897580	0.82[ASN][1000 genomes]
rs6569796	0.83[ASN][1000 genomes]
rs6901240	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6901661	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6901691	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6906574	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6921325	0.82[ASN][1000 genomes]
rs6922502	0.86[ASN][1000 genomes]
rs6923916	0.86[ASN][1000 genomes]
rs6929072	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6937815	0.82[ASN][1000 genomes]
rs6938427	0.82[ASN][1000 genomes]
rs6942368	0.82[ASN][1000 genomes]
rs73776207	0.83[ASN][1000 genomes]
rs7450274	0.86[ASN][1000 genomes]
rs7743007	0.86[ASN][1000 genomes]
rs7743456	0.86[ASN][1000 genomes]
rs7750935	0.83[ASN][1000 genomes]
rs7754992	0.82[ASN][1000 genomes]
rs7757469	0.83[ASN][1000 genomes]
rs7757641	0.83[ASN][1000 genomes]
rs7759787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770281	0.86[ASN][1000 genomes]
rs7770326	0.83[ASN][1000 genomes]
rs8180540	0.83[ASN][1000 genomes]
rs9375888	0.82[ASN][1000 genomes]
rs9385605	0.86[ASN][1000 genomes]
rs9388993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388994	0.86[ASN][1000 genomes]
rs9388995	0.82[ASN][1000 genomes]
rs9399023	0.84[ASN][1000 genomes]
rs9399027	0.83[ASN][1000 genomes]
rs9402405	0.86[ASN][1000 genomes]
rs9483442	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9493308	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886675	chr6:132683762-132730947	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604668	chr6:132687248-132731358	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1338934	MOXD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132723400-132726600	Enhancers	NHDF-Ad	bronchial
2	chr6:132724200-132727800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:132724400-132726400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:132724600-132727000	Flanking Active TSS	GM12878-XiMat	blood
5	chr6:132724800-132726200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:132724800-132727600	Enhancers	Osteobl	bone
7	chr6:132725000-132727200	Enhancers	NHLF	lung
8	chr6:132725200-132727400	Enhancers	NH-A	brain
9	chr6:132725200-132734800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:132725400-132727600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:132725600-132726400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:132725600-132726800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:132725600-132727200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:132725800-132726200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr6:132725800-132727000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:132726000-132726400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:132726000-132726400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:132726000-132727400	Enhancers	HSMM	muscle

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