Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1000849	0.81[ASN][1000 genomes]
rs1338934	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1338936	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1338937	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1338938	0.81[ASN][1000 genomes]
rs1538307	0.81[ASN][1000 genomes]
rs2153175	0.81[ASN][1000 genomes]
rs2185185	0.81[ASN][1000 genomes]
rs2327242	0.81[ASN][1000 genomes]
rs2876186	0.81[ASN][1000 genomes]
rs6901661	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906574	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6929072	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7450274	0.81[ASN][1000 genomes]
rs7743007	0.81[ASN][1000 genomes]
rs7743456	0.81[ASN][1000 genomes]
rs7759787	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9385605	0.81[ASN][1000 genomes]
rs9388993	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9402405	0.81[ASN][1000 genomes]
rs9483442	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9493308	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9493309	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886675	chr6:132683762-132730947	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604668	chr6:132687248-132731358	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6901240	MOXD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132723400-132724600	Weak transcription	GM12878-XiMat	blood
2	chr6:132723400-132725000	Weak transcription	NHLF	lung
3	chr6:132723400-132725200	Weak transcription	NH-A	brain
4	chr6:132723400-132725600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:132723400-132725800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:132723400-132726000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:132723400-132726000	Weak transcription	HSMM	muscle
8	chr6:132723400-132726600	Enhancers	NHDF-Ad	bronchial
9	chr6:132723600-132725400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:132724000-132724600	Active TSS	Fetal Kidney	kidney
11	chr6:132724200-132727800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:132724400-132724600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:132724400-132725200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:132724400-132726400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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