Variant report

Variant	rs13390697
Chromosome Location	chr2:189530700-189530701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13407617	1.00[AMR][1000 genomes]
rs61263882	1.00[AMR][1000 genomes]
rs6734497	1.00[AMR][1000 genomes]
rs7603970	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189525000-189532800	Weak transcription	A549	lung
2	chr2:189525000-189534000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:189528200-189532400	Weak transcription	NHLF	lung
4	chr2:189529400-189531200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:189529400-189539000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:189529800-189532800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:189530200-189531200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:189530200-189531600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:189530200-189533000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:189530400-189531400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:189530400-189531400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr2:189530400-189531600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr2:189530400-189532200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:189530400-189532400	Weak transcription	NH-A	brain
15	chr2:189530400-189532600	Weak transcription	Colon Smooth Muscle	Colon
16	chr2:189530400-189533000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr2:189530600-189532400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:189530600-189532400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:189530600-189532400	Weak transcription	Osteobl	bone
20	chr2:189530600-189532600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:189530600-189532800	Weak transcription	NHDF-Ad	bronchial

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