Variant report

Variant	rs13407617
Chromosome Location	chr2:189540692-189540693
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10205533	0.81[YRI][hapmap]
rs13390697	1.00[AMR][1000 genomes]
rs61263882	1.00[AMR][1000 genomes]
rs6734497	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7603970	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189539200-189541000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr2:189539400-189541000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:189539400-189542400	Enhancers	HSMM	muscle
4	chr2:189539600-189543400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:189539800-189540800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:189539800-189541000	Enhancers	NH-A	brain
7	chr2:189540000-189541400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:189540000-189541600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:189540000-189541600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:189540000-189542400	Enhancers	Osteobl	bone
11	chr2:189540200-189540800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr2:189540200-189541000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr2:189540200-189541000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr2:189540200-189541000	Enhancers	A549	lung
15	chr2:189540200-189541200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:189540200-189542200	Enhancers	NHDF-Ad	bronchial
17	chr2:189540400-189541000	Enhancers	Placenta Amnion	Placenta Amnion
18	chr2:189540600-189540800	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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