Variant report

Variant	rs13392009
Chromosome Location	chr2:181694330-181694331
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10183078	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13420158	1.00[ASN][1000 genomes]
rs55689047	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57387041	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57416358	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73974605	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73974608	0.98[ASN][1000 genomes]
rs7590788	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834475	chr2:181537463-181724891	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181693400-181694800	Enhancers	NHEK	skin
2	chr2:181693400-181695000	Enhancers	Hela-S3	cervix
3	chr2:181693600-181695000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:181693600-181695000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:181693800-181695000	Enhancers	HMEC	breast
6	chr2:181694000-181694800	Enhancers	A549	lung
7	chr2:181694000-181694800	Enhancers	HSMMtube	muscle
8	chr2:181694200-181694800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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