Variant report
| Variant | rs57387041 |
|---|---|
| Chromosome Location | chr2:181672022-181672023 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:181668124..181670323-chr2:181671473..181674084,2 | K562 | blood: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CERKL-8 | chr2:181671577-181672586 | NONHSAT075849 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs10183078 | 0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13392009 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13420158 | 0.97[ASN][1000 genomes] |
| rs4490142 | 0.82[AFR][1000 genomes] |
| rs55689047 | 0.97[ASN][1000 genomes] |
| rs57416358 | 0.97[ASN][1000 genomes] |
| rs73974605 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73974608 | 0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834475 | chr2:181537463-181724891 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
