Variant report

Variant	rs1339256
Chromosome Location	chr20:15933163-15933164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16996604	1.00[TSI][hapmap]
rs16996626	1.00[JPT][hapmap]
rs2041424	1.00[TSI][hapmap]
rs41439350	1.00[JPT][hapmap]
rs4814421	0.89[ASW][hapmap];1.00[MEX][hapmap]
rs6034337	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs6043632	1.00[MEX][hapmap]
rs6043638	0.88[YRI][hapmap]
rs6074977	0.86[AFR][1000 genomes]
rs6080022	1.00[MEX][hapmap]
rs6131746	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7352227	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15923000-15951200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr20:15924200-15938400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:15930800-15933400	Enhancers	Hela-S3	cervix
4	chr20:15931000-15937200	Strong transcription	Primary B cells from cord blood	blood
5	chr20:15932200-15933200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr20:15932200-15933200	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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