Variant report

Variant	rs6074977
Chromosome Location	chr20:15931275-15931276
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1339256	0.86[AFR][1000 genomes]
rs6034337	0.89[AFR][1000 genomes]
rs6043638	0.84[AFR][1000 genomes]
rs6074981	0.87[EUR][1000 genomes]
rs6080029	0.91[EUR][1000 genomes]
rs6080033	0.91[EUR][1000 genomes]
rs6080037	0.91[EUR][1000 genomes]
rs6080041	0.91[EUR][1000 genomes]
rs6080049	0.91[EUR][1000 genomes]
rs6080053	0.91[EUR][1000 genomes]
rs6080059	0.87[EUR][1000 genomes]
rs62194182	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15923000-15951200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr20:15924200-15938400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:15929600-15931400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr20:15930200-15932400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr20:15930400-15931400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr20:15930600-15932200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr20:15930800-15933400	Enhancers	Hela-S3	cervix
8	chr20:15931000-15932400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:15931000-15937200	Strong transcription	Primary B cells from cord blood	blood
10	chr20:15931200-15932200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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