Variant report

Variant	rs13392981
Chromosome Location	chr2:101206265-101206266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11123838	0.91[CHB][hapmap];0.89[CHD][hapmap];0.89[ASN][1000 genomes]
rs12469806	0.81[JPT][hapmap]
rs2970993	0.84[ASN][1000 genomes]
rs35658386	0.90[ASN][1000 genomes]
rs35662130	0.97[EUR][1000 genomes]
rs57619803	0.92[ASN][1000 genomes]
rs62152478	0.92[ASN][1000 genomes]
rs6705682	0.86[ASN][1000 genomes]
rs72966916	0.89[ASN][1000 genomes]
rs7587860	0.86[ASN][1000 genomes]
rs7594990	0.83[CHD][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv916792	chr2:101021066-101525200	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv582532	chr2:101029002-101531943	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv834312	chr2:101044438-101238166	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13392981	COX5B	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:101202000-101210200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:101202000-101210600	Weak transcription	Primary T cells from cord blood	blood
3	chr2:101205000-101210600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr2:101205200-101210000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr2:101205200-101211000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr2:101205800-101206400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr2:101205800-101206400	Enhancers	Placenta	Placenta
8	chr2:101205800-101206400	Enhancers	Spleen	Spleen
9	chr2:101205800-101210200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr2:101205800-101210400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr2:101206000-101206400	Enhancers	A549	lung
12	chr2:101206200-101206400	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:101206200-101206400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:101206200-101206400	Enhancers	Pancreas	Pancrea
15	chr2:101206200-101206400	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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