Variant report

Variant	rs57619803
Chromosome Location	chr2:101204937-101204938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:101181862..101183562-chr2:101202599..101205264,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11123838	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13392981	0.92[ASN][1000 genomes]
rs2970993	0.91[ASN][1000 genomes]
rs35658386	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56407824	0.86[ASN][1000 genomes]
rs60927663	0.86[ASN][1000 genomes]
rs62152478	0.99[ASN][1000 genomes]
rs6705682	0.93[ASN][1000 genomes]
rs72966916	0.97[ASN][1000 genomes]
rs7587860	0.93[ASN][1000 genomes]
rs7594990	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv916792	chr2:101021066-101525200	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv582532	chr2:101029002-101531943	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv834312	chr2:101044438-101238166	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:101194800-101206200	Weak transcription	Pancreas	Pancrea
2	chr2:101202000-101210200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr2:101202000-101210600	Weak transcription	Primary T cells from cord blood	blood
4	chr2:101203800-101205200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr2:101204000-101205800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr2:101204200-101205000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr2:101204200-101205000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr2:101204200-101205200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr2:101204200-101205200	Enhancers	Hela-S3	cervix
10	chr2:101204200-101205600	Enhancers	Primary T cells fromperipheralblood	blood
11	chr2:101204200-101205800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr2:101204200-101205800	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr2:101204200-101206200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr2:101204200-101206200	Enhancers	K562	blood
15	chr2:101204600-101205000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:101204600-101205000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:101204600-101205000	Enhancers	A549	lung
18	chr2:101204600-101205000	Enhancers	GM12878-XiMat	blood
19	chr2:101204600-101205000	Enhancers	HSMM	muscle
20	chr2:101204600-101205000	Enhancers	HUVEC	blood vessel
21	chr2:101204600-101205000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr2:101204800-101205000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr2:101204800-101205000	Enhancers	NHEK	skin
24	chr2:101204800-101205200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr2:101204800-101205800	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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