Variant report

Variant	rs13397282
Chromosome Location	chr2:205406817-205406818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr2:205406209-205406853	K562	blood:	n/a	n/a
2	ARID3A	chr2:205406143-205406862	K562	blood:	n/a	n/a
3	TAL1	chr2:205406268-205406877	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:205406485..205408306-chr2:205408736..205410499,2	K562	blood:

Variant related genes	Relation type
PARD3B	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10166278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10175056	1.00[EUR][1000 genomes]
rs10184804	1.00[EUR][1000 genomes]
rs10184836	1.00[EUR][1000 genomes]
rs10190012	1.00[EUR][1000 genomes]
rs10190374	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10194617	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10199785	1.00[EUR][1000 genomes]
rs10199977	1.00[EUR][1000 genomes]
rs10205679	1.00[EUR][1000 genomes]
rs11899900	1.00[EUR][1000 genomes]
rs11904034	1.00[EUR][1000 genomes]
rs11904064	1.00[EUR][1000 genomes]
rs12328341	1.00[AMR][1000 genomes]
rs12328697	1.00[EUR][1000 genomes]
rs13385968	1.00[AMR][1000 genomes]
rs13387699	1.00[AMR][1000 genomes]
rs13390481	1.00[EUR][1000 genomes]
rs13397135	1.00[EUR][1000 genomes]
rs13399833	1.00[EUR][1000 genomes]
rs13399965	1.00[EUR][1000 genomes]
rs13400246	1.00[EUR][1000 genomes]
rs13407064	1.00[EUR][1000 genomes]
rs13410864	1.00[EUR][1000 genomes]
rs13412566	1.00[EUR][1000 genomes]
rs13427607	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13428250	1.00[EUR][1000 genomes]
rs2197690	1.00[EUR][1000 genomes]
rs4645000	1.00[EUR][1000 genomes]
rs6741392	1.00[EUR][1000 genomes]
rs6742942	1.00[EUR][1000 genomes]
rs73057258	1.00[EUR][1000 genomes]
rs73057269	1.00[EUR][1000 genomes]
rs73057270	1.00[EUR][1000 genomes]
rs73984226	1.00[EUR][1000 genomes]
rs9288355	1.00[EUR][1000 genomes]
rs9973966	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205395600-205409000	Weak transcription	Fetal Intestine Large	intestine
2	chr2:205397600-205409600	Weak transcription	Pancreas	Pancrea
3	chr2:205398600-205409400	Weak transcription	HSMMtube	muscle
4	chr2:205398800-205407600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:205403400-205408800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:205403400-205409200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr2:205403400-205409200	Weak transcription	Spleen	Spleen
8	chr2:205403400-205409600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:205403600-205409200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:205403600-205409200	Weak transcription	Brain Hippocampus Middle	brain
11	chr2:205403600-205409400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:205403600-205409400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:205403800-205407800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:205403800-205408200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:205403800-205409000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr2:205403800-205409200	Weak transcription	Colon Smooth Muscle	Colon
17	chr2:205403800-205409600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:205404000-205409400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr2:205404000-205409400	Weak transcription	HSMM	muscle
20	chr2:205404200-205407600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:205404200-205407800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr2:205404200-205409200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:205404200-205409400	Weak transcription	NHLF	lung
24	chr2:205405000-205407600	Weak transcription	NHDF-Ad	bronchial
25	chr2:205405200-205409200	Weak transcription	HUVEC	blood vessel
26	chr2:205405800-205407000	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links