Variant report

Variant	rs13412566
Chromosome Location	chr2:205434493-205434494
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10166278	1.00[EUR][1000 genomes]
rs10175056	1.00[EUR][1000 genomes]
rs10184804	1.00[EUR][1000 genomes]
rs10184836	1.00[EUR][1000 genomes]
rs10185786	0.87[ASW][hapmap];0.87[MKK][hapmap];0.80[YRI][hapmap]
rs10190012	0.88[ASW][hapmap];0.97[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10190374	1.00[EUR][1000 genomes]
rs10194617	1.00[EUR][1000 genomes]
rs10199785	1.00[EUR][1000 genomes]
rs10199977	1.00[EUR][1000 genomes]
rs10203606	0.86[YRI][hapmap]
rs10203725	0.94[ASN][1000 genomes]
rs10205679	1.00[EUR][1000 genomes]
rs10932074	0.80[YRI][hapmap]
rs10932075	0.80[YRI][hapmap]
rs10932076	0.81[ASN][1000 genomes]
rs11883548	0.83[ASN][1000 genomes]
rs11890980	0.94[ASN][1000 genomes]
rs11892599	0.94[ASN][1000 genomes]
rs11899900	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11901243	0.81[ASN][1000 genomes]
rs11903539	0.81[ASN][1000 genomes]
rs11904034	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11904064	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11904833	0.94[ASN][1000 genomes]
rs12052242	0.81[ASN][1000 genomes]
rs12328697	1.00[EUR][1000 genomes]
rs13390481	1.00[EUR][1000 genomes]
rs13397135	1.00[EUR][1000 genomes]
rs13397282	1.00[EUR][1000 genomes]
rs13399833	1.00[EUR][1000 genomes]
rs13399965	1.00[EUR][1000 genomes]
rs13400246	1.00[EUR][1000 genomes]
rs13407064	1.00[EUR][1000 genomes]
rs13410864	1.00[EUR][1000 genomes]
rs13414039	0.94[ASN][1000 genomes]
rs13418573	0.94[ASW][hapmap];0.91[MKK][hapmap]
rs13427607	1.00[EUR][1000 genomes]
rs13428250	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16836425	0.85[ASN][1000 genomes]
rs2197690	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4645000	1.00[EUR][1000 genomes]
rs57533510	0.83[ASN][1000 genomes]
rs57675666	0.83[ASN][1000 genomes]
rs60179096	0.83[ASN][1000 genomes]
rs60317037	0.85[ASN][1000 genomes]
rs61280844	0.94[ASN][1000 genomes]
rs6741392	1.00[EUR][1000 genomes]
rs6742942	1.00[EUR][1000 genomes]
rs6743282	0.92[ASN][1000 genomes]
rs73057258	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73057269	1.00[EUR][1000 genomes]
rs73057270	1.00[EUR][1000 genomes]
rs73057275	0.93[ASN][1000 genomes]
rs73057279	0.94[ASN][1000 genomes]
rs73057289	0.93[ASN][1000 genomes]
rs73059006	0.83[ASN][1000 genomes]
rs73059007	0.83[ASN][1000 genomes]
rs73059010	0.83[ASN][1000 genomes]
rs73059031	0.81[ASN][1000 genomes]
rs73984226	1.00[EUR][1000 genomes]
rs73984241	0.94[ASN][1000 genomes]
rs73984246	0.83[ASN][1000 genomes]
rs73984251	0.81[ASN][1000 genomes]
rs73984252	0.81[ASN][1000 genomes]
rs73984257	0.83[ASN][1000 genomes]
rs73984258	0.83[ASN][1000 genomes]
rs7557006	0.83[ASN][1000 genomes]
rs7575842	0.82[ASN][1000 genomes]
rs7577949	0.83[ASN][1000 genomes]
rs9288355	1.00[EUR][1000 genomes]
rs9973966	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205411600-205438000	Weak transcription	Left Ventricle	heart
2	chr2:205417600-205434600	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:205425800-205454400	Weak transcription	HSMM	muscle
4	chr2:205427800-205434600	Weak transcription	Ovary	ovary
5	chr2:205429200-205437800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:205430000-205434800	Weak transcription	Fetal Intestine Small	intestine
7	chr2:205430000-205438400	Weak transcription	Aorta	Aorta
8	chr2:205431000-205436000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:205431200-205438400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:205431600-205440600	Weak transcription	Adipose Nuclei	Adipose
11	chr2:205434400-205436000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:205434400-205436200	Enhancers	Rectal Smooth Muscle	rectum

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