Variant report

Variant	rs10203606
Chromosome Location	chr2:205416007-205416008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:205409472..205412242-chr2:205415105..205417693,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116117	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10185786	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs10190012	0.86[YRI][hapmap]
rs10203725	0.88[AFR][1000 genomes]
rs10932074	0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs10932075	0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs13414039	0.90[AFR][1000 genomes]
rs13418573	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs6749339	0.87[YRI][hapmap]
rs7565043	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205411200-205416200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr2:205411400-205416200	Weak transcription	Gastric	stomach
3	chr2:205411400-205416800	Weak transcription	Pancreas	Pancrea
4	chr2:205411600-205417000	Weak transcription	Psoas Muscle	Psoas
5	chr2:205411600-205426600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:205411600-205438000	Weak transcription	Left Ventricle	heart
7	chr2:205411800-205419400	Weak transcription	Fetal Muscle Leg	muscle
8	chr2:205412000-205417200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr2:205412000-205427600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr2:205412000-205429800	Weak transcription	Aorta	Aorta
11	chr2:205412200-205416200	Weak transcription	Right Atrium	heart
12	chr2:205412400-205417600	Enhancers	Colon Smooth Muscle	Colon
13	chr2:205413200-205417200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:205413600-205417000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr2:205413800-205416600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr2:205414200-205416200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr2:205414200-205416400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr2:205414400-205417200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr2:205414600-205416400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr2:205414600-205416600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:205414600-205416600	Enhancers	Rectal Smooth Muscle	rectum
22	chr2:205414600-205416800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr2:205414800-205416200	Enhancers	Brain Hippocampus Middle	brain
24	chr2:205414800-205416200	Enhancers	HSMM	muscle
25	chr2:205414800-205416600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr2:205414800-205416600	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr2:205414800-205416600	Enhancers	Osteobl	bone
28	chr2:205415000-205416200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr2:205415000-205416200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:205415000-205416400	Enhancers	Fetal Brain Male	brain
31	chr2:205415000-205416400	Enhancers	NHEK	skin
32	chr2:205415000-205417200	Enhancers	Fetal Stomach	stomach
33	chr2:205415200-205416200	Enhancers	Muscle Satellite Cultured Cells	--
34	chr2:205415200-205416400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr2:205415200-205416400	Enhancers	Fetal Kidney	kidney
36	chr2:205415400-205416200	Enhancers	Brain Cingulate Gyrus	brain
37	chr2:205415400-205416200	Enhancers	NH-A	brain
38	chr2:205415400-205416200	Flanking Active TSS	NHLF	lung
39	chr2:205415400-205416400	Enhancers	Fetal Brain Female	brain
40	chr2:205415400-205416800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr2:205415400-205417000	Enhancers	Stomach Mucosa	stomach
42	chr2:205415400-205417200	Enhancers	Fetal Intestine Small	intestine
43	chr2:205415400-205417400	Enhancers	HSMMtube	muscle
44	chr2:205415600-205416400	Enhancers	H1 Cell Line	embryonic stem cell
45	chr2:205415600-205416400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr2:205415600-205416400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr2:205415600-205416400	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr2:205415600-205417000	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr2:205415600-205417000	Enhancers	Fetal Intestine Large	intestine
50	chr2:205415600-205417200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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