Variant report

Variant	rs10203725
Chromosome Location	chr2:205446235-205446236
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10185786	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10203606	0.88[AFR][1000 genomes]
rs10932074	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10932075	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10932076	0.86[ASN][1000 genomes]
rs11883548	0.89[ASN][1000 genomes]
rs11887897	0.84[ASN][1000 genomes]
rs11890980	0.89[ASN][1000 genomes]
rs11892599	1.00[ASN][1000 genomes]
rs11901243	0.86[ASN][1000 genomes]
rs11903539	0.86[ASN][1000 genomes]
rs11904034	0.93[ASN][1000 genomes]
rs11904833	1.00[ASN][1000 genomes]
rs12052242	0.86[ASN][1000 genomes]
rs13393438	1.00[EUR][1000 genomes]
rs13412566	0.94[ASN][1000 genomes]
rs13414039	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13418573	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16836406	0.84[ASN][1000 genomes]
rs16836425	0.90[ASN][1000 genomes]
rs55775811	0.84[ASN][1000 genomes]
rs56310794	0.84[ASN][1000 genomes]
rs57533510	0.89[ASN][1000 genomes]
rs57675666	0.89[ASN][1000 genomes]
rs59978061	0.83[ASN][1000 genomes]
rs60179096	0.89[ASN][1000 genomes]
rs60317037	0.90[ASN][1000 genomes]
rs61280844	0.94[ASN][1000 genomes]
rs6731832	0.84[ASN][1000 genomes]
rs6743282	0.97[ASN][1000 genomes]
rs73057234	1.00[EUR][1000 genomes]
rs73057275	0.96[ASN][1000 genomes]
rs73057279	1.00[ASN][1000 genomes]
rs73057289	0.99[ASN][1000 genomes]
rs73059006	0.89[ASN][1000 genomes]
rs73059007	0.89[ASN][1000 genomes]
rs73059010	0.89[ASN][1000 genomes]
rs73059013	0.82[ASN][1000 genomes]
rs73059018	0.84[ASN][1000 genomes]
rs73059031	0.86[ASN][1000 genomes]
rs73984241	1.00[ASN][1000 genomes]
rs73984246	0.89[ASN][1000 genomes]
rs73984251	0.86[ASN][1000 genomes]
rs73984252	0.86[ASN][1000 genomes]
rs73984257	0.89[ASN][1000 genomes]
rs73984258	0.89[ASN][1000 genomes]
rs7557006	0.89[ASN][1000 genomes]
rs7565043	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7570984	0.80[ASN][1000 genomes]
rs7575842	0.87[ASN][1000 genomes]
rs7577949	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205425800-205454400	Weak transcription	HSMM	muscle
2	chr2:205438800-205448600	Weak transcription	Left Ventricle	heart
3	chr2:205438800-205458000	Weak transcription	Gastric	stomach
4	chr2:205439600-205450600	Weak transcription	Aorta	Aorta
5	chr2:205441000-205446400	Weak transcription	Fetal Intestine Large	intestine
6	chr2:205441000-205454600	Weak transcription	Psoas Muscle	Psoas
7	chr2:205444600-205448600	Weak transcription	Pancreas	Pancrea
8	chr2:205445200-205448400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:205445400-205446400	Weak transcription	Ovary	ovary
10	chr2:205446200-205446600	Weak transcription	Brain Anterior Caudate	brain
11	chr2:205446200-205447200	Enhancers	Fetal Intestine Small	intestine

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