Variant report

Variant	rs7565043
Chromosome Location	chr2:205448791-205448792
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10185786	0.94[ASW][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10190012	0.81[ASW][hapmap];1.00[MEX][hapmap]
rs10203606	0.95[YRI][hapmap];0.90[AFR][1000 genomes]
rs10203725	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10932074	0.92[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10932075	0.92[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13393438	1.00[EUR][1000 genomes]
rs13414039	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13418573	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6749339	0.83[YRI][hapmap]
rs73057234	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205425800-205454400	Weak transcription	HSMM	muscle
2	chr2:205438800-205458000	Weak transcription	Gastric	stomach
3	chr2:205439600-205450600	Weak transcription	Aorta	Aorta
4	chr2:205441000-205454600	Weak transcription	Psoas Muscle	Psoas
5	chr2:205446800-205456200	Weak transcription	Brain Anterior Caudate	brain
6	chr2:205447200-205450000	Weak transcription	Fetal Intestine Small	intestine
7	chr2:205447200-205454200	Weak transcription	Ovary	ovary
8	chr2:205448200-205449800	Weak transcription	Right Ventricle	heart
9	chr2:205448400-205449000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:205448400-205449000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:205448600-205448800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:205448600-205448800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:205448600-205448800	Enhancers	Left Ventricle	heart
14	chr2:205448600-205449000	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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