Variant report

Variant	rs13393438
Chromosome Location	chr2:205432491-205432492
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10185786	1.00[EUR][1000 genomes]
rs10203725	1.00[EUR][1000 genomes]
rs10932074	1.00[EUR][1000 genomes]
rs10932075	1.00[EUR][1000 genomes]
rs13414039	1.00[EUR][1000 genomes]
rs13418573	1.00[EUR][1000 genomes]
rs73057234	1.00[EUR][1000 genomes]
rs7565043	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205411600-205438000	Weak transcription	Left Ventricle	heart
2	chr2:205417600-205434600	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:205425800-205454400	Weak transcription	HSMM	muscle
4	chr2:205427800-205434600	Weak transcription	Ovary	ovary
5	chr2:205429200-205437800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:205430000-205434800	Weak transcription	Fetal Intestine Small	intestine
7	chr2:205430000-205438400	Weak transcription	Aorta	Aorta
8	chr2:205430800-205434400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:205431000-205436000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:205431200-205438400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:205431600-205440600	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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