Variant report

Variant	rs16836406
Chromosome Location	chr2:205485664-205485665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10203725	0.84[ASN][1000 genomes]
rs10932076	0.95[ASN][1000 genomes]
rs11883548	0.90[ASN][1000 genomes]
rs11887897	0.97[ASN][1000 genomes]
rs11892599	0.84[ASN][1000 genomes]
rs11901243	0.96[ASN][1000 genomes]
rs11903539	0.95[ASN][1000 genomes]
rs11904034	0.88[ASN][1000 genomes]
rs11904833	0.84[ASN][1000 genomes]
rs12052242	0.95[ASN][1000 genomes]
rs13414039	0.84[ASN][1000 genomes]
rs16836425	0.91[ASN][1000 genomes]
rs55775811	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs56310794	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs57533510	0.96[ASN][1000 genomes]
rs57675666	0.92[ASN][1000 genomes]
rs59978061	0.93[ASN][1000 genomes]
rs60179096	0.95[ASN][1000 genomes]
rs60317037	0.91[ASN][1000 genomes]
rs6731832	0.97[ASN][1000 genomes]
rs6743282	0.87[ASN][1000 genomes]
rs73057275	0.83[ASN][1000 genomes]
rs73057279	0.84[ASN][1000 genomes]
rs73057289	0.83[ASN][1000 genomes]
rs73059006	0.95[ASN][1000 genomes]
rs73059007	0.95[ASN][1000 genomes]
rs73059010	0.95[ASN][1000 genomes]
rs73059013	0.89[ASN][1000 genomes]
rs73059018	0.97[ASN][1000 genomes]
rs73059031	0.96[ASN][1000 genomes]
rs73984241	0.84[ASN][1000 genomes]
rs73984246	0.95[ASN][1000 genomes]
rs73984251	0.96[ASN][1000 genomes]
rs73984252	0.98[ASN][1000 genomes]
rs73984257	0.96[ASN][1000 genomes]
rs73984258	0.96[ASN][1000 genomes]
rs7557006	0.92[ASN][1000 genomes]
rs7570984	0.84[ASN][1000 genomes]
rs7575842	0.94[ASN][1000 genomes]
rs7577949	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv875722	chr2:205462099-205572718	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205476000-205486600	Weak transcription	Gastric	stomach
2	chr2:205477000-205491800	Weak transcription	Fetal Lung	lung
3	chr2:205481200-205493600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:205481400-205501000	Weak transcription	Aorta	Aorta
5	chr2:205481600-205494200	Weak transcription	Fetal Brain Male	brain
6	chr2:205482200-205493800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:205482600-205485800	Weak transcription	Stomach Mucosa	stomach
8	chr2:205482600-205486800	Weak transcription	Pancreas	Pancrea
9	chr2:205484000-205486800	Weak transcription	Right Atrium	heart
10	chr2:205484000-205493000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:205484000-205493800	Weak transcription	HSMM	muscle
12	chr2:205485400-205485800	Active TSS	Stomach Smooth Muscle	stomach
13	chr2:205485400-205486000	Enhancers	Fetal Intestine Small	intestine
14	chr2:205485400-205486800	Enhancers	Colon Smooth Muscle	Colon
15	chr2:205485600-205490000	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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