Variant report

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10203725	0.89[ASN][1000 genomes]
rs10932076	0.91[ASN][1000 genomes]
rs11883548	0.86[ASN][1000 genomes]
rs11887897	0.96[ASN][1000 genomes]
rs11892599	0.89[ASN][1000 genomes]
rs11901243	0.94[ASN][1000 genomes]
rs11903539	0.91[ASN][1000 genomes]
rs11904034	0.90[ASN][1000 genomes]
rs11904833	0.89[ASN][1000 genomes]
rs12052242	0.91[ASN][1000 genomes]
rs13412566	0.83[ASN][1000 genomes]
rs13414039	0.89[ASN][1000 genomes]
rs16836406	0.96[ASN][1000 genomes]
rs16836425	0.96[ASN][1000 genomes]
rs55775811	0.96[ASN][1000 genomes]
rs56310794	0.96[ASN][1000 genomes]
rs57533510	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57675666	0.88[ASN][1000 genomes]
rs59978061	0.91[ASN][1000 genomes]
rs60179096	0.94[ASN][1000 genomes]
rs60317037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61280844	0.83[ASN][1000 genomes]
rs6731832	0.96[ASN][1000 genomes]
rs6743282	0.88[ASN][1000 genomes]
rs73057275	0.87[ASN][1000 genomes]
rs73057279	0.89[ASN][1000 genomes]
rs73057289	0.87[ASN][1000 genomes]
rs73059006	0.94[ASN][1000 genomes]
rs73059007	0.94[ASN][1000 genomes]
rs73059010	0.94[ASN][1000 genomes]
rs73059013	0.87[ASN][1000 genomes]
rs73059018	0.96[ASN][1000 genomes]
rs73059031	0.94[ASN][1000 genomes]
rs73984241	0.89[ASN][1000 genomes]
rs73984246	0.94[ASN][1000 genomes]
rs73984251	0.94[ASN][1000 genomes]
rs73984252	0.97[ASN][1000 genomes]
rs73984258	1.00[ASN][1000 genomes]
rs7557006	0.88[ASN][1000 genomes]
rs7575842	0.90[ASN][1000 genomes]
rs7577949	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv875722	chr2:205462099-205572718	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875723	chr2:205489653-205612846	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205481400-205501000	Weak transcription	Aorta	Aorta
2	chr2:205486000-205499200	Weak transcription	Fetal Intestine Small	intestine
3	chr2:205490200-205505000	Weak transcription	Left Ventricle	heart
4	chr2:205494200-205508800	Weak transcription	HSMM	muscle
5	chr2:205494200-205509800	Weak transcription	HSMMtube	muscle
6	chr2:205495000-205503200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:205497600-205497800	Weak transcription	Ovary	ovary

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