Variant report

Variant	rs73057279
Chromosome Location	chr2:205444298-205444299
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:205438155..205440984-chr2:205442811..205444516,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10203725	1.00[ASN][1000 genomes]
rs10932076	0.86[ASN][1000 genomes]
rs11883548	0.89[ASN][1000 genomes]
rs11887897	0.84[ASN][1000 genomes]
rs11890980	0.89[ASN][1000 genomes]
rs11892599	1.00[ASN][1000 genomes]
rs11901243	0.86[ASN][1000 genomes]
rs11902442	0.94[AFR][1000 genomes]
rs11903539	0.86[ASN][1000 genomes]
rs11904034	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11904833	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12052242	0.86[ASN][1000 genomes]
rs13412566	0.94[ASN][1000 genomes]
rs13414039	1.00[ASN][1000 genomes]
rs16836406	0.84[ASN][1000 genomes]
rs16836425	0.90[ASN][1000 genomes]
rs55775811	0.84[ASN][1000 genomes]
rs56310794	0.84[ASN][1000 genomes]
rs57533510	0.89[ASN][1000 genomes]
rs57675666	0.89[ASN][1000 genomes]
rs58974771	0.86[AFR][1000 genomes]
rs59978061	0.83[ASN][1000 genomes]
rs60179096	0.89[ASN][1000 genomes]
rs60317037	0.90[ASN][1000 genomes]
rs61280844	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6731832	0.84[ASN][1000 genomes]
rs6743282	0.97[ASN][1000 genomes]
rs73057275	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73057281	0.98[AFR][1000 genomes]
rs73057289	0.99[ASN][1000 genomes]
rs73059006	0.89[ASN][1000 genomes]
rs73059007	0.89[ASN][1000 genomes]
rs73059010	0.89[ASN][1000 genomes]
rs73059013	0.82[ASN][1000 genomes]
rs73059018	0.84[ASN][1000 genomes]
rs73059031	0.86[ASN][1000 genomes]
rs73984241	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73984246	0.89[ASN][1000 genomes]
rs73984251	0.86[ASN][1000 genomes]
rs73984252	0.86[ASN][1000 genomes]
rs73984257	0.89[ASN][1000 genomes]
rs73984258	0.89[ASN][1000 genomes]
rs7557006	0.89[ASN][1000 genomes]
rs7570984	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7575842	0.87[ASN][1000 genomes]
rs7577949	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205425800-205454400	Weak transcription	HSMM	muscle
2	chr2:205438800-205448600	Weak transcription	Left Ventricle	heart
3	chr2:205438800-205458000	Weak transcription	Gastric	stomach
4	chr2:205439600-205450600	Weak transcription	Aorta	Aorta
5	chr2:205441000-205446200	Weak transcription	Fetal Intestine Small	intestine
6	chr2:205441000-205446400	Weak transcription	Fetal Intestine Large	intestine
7	chr2:205441000-205454600	Weak transcription	Psoas Muscle	Psoas
8	chr2:205444000-205444600	Enhancers	Pancreas	Pancrea
9	chr2:205444000-205445200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:205444000-205445400	Enhancers	Ovary	ovary
11	chr2:205444200-205444600	Enhancers	Brain Cingulate Gyrus	brain
12	chr2:205444200-205444800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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