Variant report

Variant	rs11902442
Chromosome Location	chr2:205455656-205455657
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11904833	0.95[AFR][1000 genomes]
rs58646057	0.83[AMR][1000 genomes]
rs58974771	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61280844	0.97[AFR][1000 genomes]
rs6741392	0.85[AMR][1000 genomes]
rs73057275	0.97[AFR][1000 genomes]
rs73057279	0.94[AFR][1000 genomes]
rs73057281	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73984241	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205438800-205458000	Weak transcription	Gastric	stomach
2	chr2:205446800-205456200	Weak transcription	Brain Anterior Caudate	brain
3	chr2:205455000-205459600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:205455000-205459800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:205455200-205457200	Enhancers	Brain Germinal Matrix	brain
6	chr2:205455400-205459200	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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