Variant report

Variant	rs73057281
Chromosome Location	chr2:205448396-205448397
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11902442	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11904833	1.00[AFR][1000 genomes]
rs58974771	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61280844	0.95[AFR][1000 genomes]
rs6742942	0.87[AMR][1000 genomes]
rs6743145	0.87[AMR][1000 genomes]
rs73057275	0.95[AFR][1000 genomes]
rs73057279	0.98[AFR][1000 genomes]
rs73057288	0.87[AMR][1000 genomes]
rs73984241	1.00[AFR][1000 genomes]
rs7589280	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205425800-205454400	Weak transcription	HSMM	muscle
2	chr2:205438800-205448600	Weak transcription	Left Ventricle	heart
3	chr2:205438800-205458000	Weak transcription	Gastric	stomach
4	chr2:205439600-205450600	Weak transcription	Aorta	Aorta
5	chr2:205441000-205454600	Weak transcription	Psoas Muscle	Psoas
6	chr2:205444600-205448600	Weak transcription	Pancreas	Pancrea
7	chr2:205445200-205448400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:205446800-205456200	Weak transcription	Brain Anterior Caudate	brain
9	chr2:205447200-205450000	Weak transcription	Fetal Intestine Small	intestine
10	chr2:205447200-205454200	Weak transcription	Ovary	ovary
11	chr2:205448200-205449800	Weak transcription	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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