Variant report

Variant	rs73057288
Chromosome Location	chr2:205452543-205452544
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10181861	1.00[EUR][1000 genomes]
rs11903539	1.00[EUR][1000 genomes]
rs16836318	1.00[EUR][1000 genomes]
rs16836499	1.00[EUR][1000 genomes]
rs28368645	1.00[EUR][1000 genomes]
rs56086550	1.00[EUR][1000 genomes]
rs61427199	1.00[EUR][1000 genomes]
rs6706016	1.00[EUR][1000 genomes]
rs6742319	1.00[EUR][1000 genomes]
rs6743145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6749339	1.00[EUR][1000 genomes]
rs6753180	1.00[EUR][1000 genomes]
rs6753277	1.00[EUR][1000 genomes]
rs73057231	1.00[EUR][1000 genomes]
rs73057281	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205425800-205454400	Weak transcription	HSMM	muscle
2	chr2:205438800-205458000	Weak transcription	Gastric	stomach
3	chr2:205441000-205454600	Weak transcription	Psoas Muscle	Psoas
4	chr2:205446800-205456200	Weak transcription	Brain Anterior Caudate	brain
5	chr2:205447200-205454200	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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