Variant report

Variant	rs16836318
Chromosome Location	chr2:205397023-205397024
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10181861	1.00[EUR][1000 genomes]
rs11903539	1.00[EUR][1000 genomes]
rs16836499	1.00[EUR][1000 genomes]
rs28368645	1.00[EUR][1000 genomes]
rs56086550	1.00[EUR][1000 genomes]
rs61427199	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6706016	1.00[EUR][1000 genomes]
rs6742319	1.00[EUR][1000 genomes]
rs6743145	1.00[EUR][1000 genomes]
rs6749339	1.00[EUR][1000 genomes]
rs6753180	1.00[EUR][1000 genomes]
rs6753277	1.00[EUR][1000 genomes]
rs73057231	1.00[EUR][1000 genomes]
rs73057288	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205395600-205409000	Weak transcription	Fetal Intestine Large	intestine
2	chr2:205395800-205400600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr2:205396000-205397600	Weak transcription	Stomach Mucosa	stomach
4	chr2:205396200-205398200	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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