Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:205391484..205394018-chr2:205397173..205399037,2	MCF-7	breast:
2	chr2:205397495..205400183-chr2:205410049..205411693,2	MCF-7	breast:
3	chr2:205398129..205402529-chr2:205407464..205410670,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116117	Chromatin interaction

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10181861	1.00[EUR][1000 genomes]
rs10932074	0.81[AMR][1000 genomes]
rs10932075	0.81[AMR][1000 genomes]
rs11903539	1.00[EUR][1000 genomes]
rs16836318	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16836499	1.00[EUR][1000 genomes]
rs28368645	1.00[EUR][1000 genomes]
rs56086550	1.00[EUR][1000 genomes]
rs6706016	1.00[EUR][1000 genomes]
rs6742319	1.00[EUR][1000 genomes]
rs6743145	1.00[EUR][1000 genomes]
rs6749339	1.00[EUR][1000 genomes]
rs6753180	1.00[EUR][1000 genomes]
rs6753277	1.00[EUR][1000 genomes]
rs73057231	1.00[EUR][1000 genomes]
rs73057234	0.81[AMR][1000 genomes]
rs73057288	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205395600-205409000	Weak transcription	Fetal Intestine Large	intestine
2	chr2:205395800-205400600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr2:205397400-205399000	Enhancers	HSMM	muscle
4	chr2:205397600-205409600	Weak transcription	Pancreas	Pancrea
5	chr2:205398000-205399400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:205398000-205399400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:205398200-205399000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr2:205398200-205399000	Enhancers	Osteobl	bone
9	chr2:205398200-205399400	Enhancers	NHDF-Ad	bronchial
10	chr2:205398200-205403000	Weak transcription	Stomach Mucosa	stomach
11	chr2:205398400-205398800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:205398400-205398800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:205398400-205398800	Enhancers	Hela-S3	cervix
14	chr2:205398400-205398800	Enhancers	HUVEC	blood vessel
15	chr2:205398400-205399000	Enhancers	Colon Smooth Muscle	Colon
16	chr2:205398600-205398800	Enhancers	Rectal Smooth Muscle	rectum
17	chr2:205398600-205400200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:205398600-205402800	Weak transcription	NH-A	brain
19	chr2:205398600-205403000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:205398600-205409400	Weak transcription	HSMMtube	muscle

Quick Search: