Variant report

Variant	rs6753180
Chromosome Location	chr2:205400830-205400831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10181861	1.00[EUR][1000 genomes]
rs11903539	1.00[EUR][1000 genomes]
rs16836318	1.00[EUR][1000 genomes]
rs16836499	1.00[EUR][1000 genomes]
rs28368645	1.00[EUR][1000 genomes]
rs56086550	1.00[EUR][1000 genomes]
rs61427199	1.00[EUR][1000 genomes]
rs6706016	1.00[EUR][1000 genomes]
rs6742319	1.00[EUR][1000 genomes]
rs6743145	1.00[EUR][1000 genomes]
rs6749339	1.00[EUR][1000 genomes]
rs6753277	1.00[EUR][1000 genomes]
rs73057231	1.00[EUR][1000 genomes]
rs73057288	1.00[EUR][1000 genomes]
rs73984245	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205395600-205409000	Weak transcription	Fetal Intestine Large	intestine
2	chr2:205397600-205409600	Weak transcription	Pancreas	Pancrea
3	chr2:205398200-205403000	Weak transcription	Stomach Mucosa	stomach
4	chr2:205398600-205402800	Weak transcription	NH-A	brain
5	chr2:205398600-205403000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:205398600-205409400	Weak transcription	HSMMtube	muscle
7	chr2:205398800-205401800	Weak transcription	HUVEC	blood vessel
8	chr2:205398800-205403000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:205398800-205407600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:205399000-205402800	Weak transcription	Colon Smooth Muscle	Colon
11	chr2:205399000-205402800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr2:205399000-205403000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr2:205399000-205403000	Weak transcription	HSMM	muscle
14	chr2:205399000-205403000	Weak transcription	Osteobl	bone
15	chr2:205399400-205402600	Weak transcription	NHDF-Ad	bronchial
16	chr2:205399400-205402800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr2:205399400-205403000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:205400200-205403000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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