Variant report

Variant	rs13398262
Chromosome Location	chr2:114737629-114737630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACTR3-1	chr2:114737486-114737705	ENSG00000243179
2	lnc-ACTR3-1	chr2:114737434-114737705	NONHSAT073855

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10182551	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10182655	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10195346	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10202743	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11901777	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11901908	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12463475	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12472051	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12473069	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13396863	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13409114	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13409146	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13421586	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3866272	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3916120	1.00[ASN][1000 genomes]
rs56351059	0.95[ASN][1000 genomes]
rs62617784	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6749304	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71416578	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114715000-114744000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:114718800-114743200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr2:114733400-114741200	Weak transcription	Liver	Liver
4	chr2:114733400-114743800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr2:114733800-114741600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr2:114734000-114737800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr2:114734000-114738000	Enhancers	Pancreas	Pancrea
8	chr2:114734000-114746000	Weak transcription	Aorta	Aorta
9	chr2:114734000-114751800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr2:114734200-114737800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:114734400-114749800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr2:114734600-114738200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr2:114734800-114741800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr2:114734800-114742400	Weak transcription	Primary B cells from cord blood	blood
15	chr2:114734800-114744000	Weak transcription	Primary T cells from cord blood	blood
16	chr2:114736000-114737800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:114736000-114738200	Weak transcription	NHDF-Ad	bronchial
18	chr2:114736000-114742600	Weak transcription	NHLF	lung
19	chr2:114736200-114738600	Weak transcription	HUVEC	blood vessel
20	chr2:114736200-114740200	Weak transcription	HSMM	muscle
21	chr2:114736200-114741200	Weak transcription	Gastric	stomach
22	chr2:114736200-114761000	Weak transcription	HSMMtube	muscle
23	chr2:114736400-114737800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr2:114736400-114737800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr2:114736600-114737800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr2:114736600-114738800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
27	chr2:114736600-114738800	Weak transcription	NH-A	brain
28	chr2:114736800-114737800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr2:114736800-114737800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
30	chr2:114736800-114737800	Weak transcription	NHEK	skin
31	chr2:114736800-114738000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr2:114736800-114738000	ZNF genes & repeats	A549	lung
33	chr2:114737000-114738000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr2:114737000-114738000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr2:114737000-114738000	ZNF genes & repeats	Fetal Intestine Small	intestine
36	chr2:114737000-114738000	ZNF genes & repeats	Placenta	Placenta
37	chr2:114737200-114738000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr2:114737200-114738600	Weak transcription	HMEC	breast
39	chr2:114737400-114737800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr2:114737400-114738000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr2:114737400-114738000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
42	chr2:114737400-114738000	ZNF genes & repeats	GM12878-XiMat	blood
43	chr2:114737400-114742200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr2:114737400-114746000	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr2:114737600-114737800	Enhancers	Esophagus	oesophagus
46	chr2:114737600-114738000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
47	chr2:114737600-114738000	Flanking Active TSS	HepG2	liver
48	chr2:114737600-114738800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
49	chr2:114737600-114739400	Enhancers	Osteobl	bone
50	chr2:114737600-114739800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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