Variant report

Variant	rs13409114
Chromosome Location	chr2:114740560-114740561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114719034..114722031-chr2:114739045..114742914,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACTR3-1	chr2:114740241-114740835	ENSG00000243179

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10182551	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10182655	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10195346	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10202743	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11901777	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11901908	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12463475	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12472051	1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12473069	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13396863	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13398262	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13409146	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13421586	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17046604	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3791742	1.00[CEU][hapmap]
rs3866272	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3916120	0.95[ASN][1000 genomes]
rs56351059	0.91[ASN][1000 genomes]
rs62617784	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6749304	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71416578	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7580260	1.00[CEU][hapmap]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114715000-114744000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:114718800-114743200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr2:114733400-114741200	Weak transcription	Liver	Liver
4	chr2:114733400-114743800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr2:114733800-114741600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr2:114734000-114746000	Weak transcription	Aorta	Aorta
7	chr2:114734000-114751800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr2:114734400-114749800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr2:114734800-114741800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr2:114734800-114742400	Weak transcription	Primary B cells from cord blood	blood
11	chr2:114734800-114744000	Weak transcription	Primary T cells from cord blood	blood
12	chr2:114736000-114742600	Weak transcription	NHLF	lung
13	chr2:114736200-114741200	Weak transcription	Gastric	stomach
14	chr2:114736200-114761000	Weak transcription	HSMMtube	muscle
15	chr2:114737400-114742200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr2:114737400-114746000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr2:114737600-114751400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:114737800-114741000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:114737800-114754400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr2:114738000-114741800	Weak transcription	GM12878-XiMat	blood
21	chr2:114738000-114742400	Weak transcription	A549	lung
22	chr2:114738000-114742400	Weak transcription	NHEK	skin
23	chr2:114738000-114744600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr2:114738000-114748800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr2:114738600-114749400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr2:114738800-114742200	Weak transcription	HepG2	liver
27	chr2:114739200-114744600	Weak transcription	NHDF-Ad	bronchial
28	chr2:114739600-114742600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr2:114739600-114752600	Weak transcription	NH-A	brain
30	chr2:114739800-114742400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr2:114739800-114742400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr2:114739800-114742400	Weak transcription	Osteobl	bone
33	chr2:114740000-114740600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr2:114740200-114741200	Strong transcription	HSMM	muscle
35	chr2:114740400-114740600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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