Variant report

Variant	rs13398372
Chromosome Location	chr2:172421120-172421121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13392902	1.00[YRI][hapmap]
rs13430202	1.00[YRI][hapmap]
rs7596578	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832950	chr2:172283513-172488111	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172412800-172421200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:172412800-172421200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:172413600-172422400	Weak transcription	Adipose Nuclei	Adipose
4	chr2:172420200-172421200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr2:172421000-172421400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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