The 2.0 version of rSNPBase

Variant report

Variant rs13430202
Chromosome Location chr2:172399663-172399664
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:172381000-172410400 Weak transcription Fetal Thymus thymus
2 chr2:172381200-172404400 Weak transcription Right Atrium heart
3 chr2:172381200-172407200 Weak transcription H1 Cell Line embryonic stem cell
4 chr2:172381200-172410400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr2:172381400-172405400 Weak transcription Fetal Heart heart
6 chr2:172386400-172419800 Weak transcription Lung lung
7 chr2:172386800-172400600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr2:172387200-172413800 Weak transcription Spleen Spleen
9 chr2:172388000-172411400 Weak transcription Rectal Smooth Muscle rectum
10 chr2:172388200-172411000 Weak transcription Brain Inferior Temporal Lobe brain
11 chr2:172388400-172411800 Weak transcription Brain Substantia Nigra brain
12 chr2:172388600-172412400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr2:172388800-172403200 Weak transcription Small Intestine intestine
14 chr2:172388800-172407400 Weak transcription HSMM muscle
15 chr2:172388800-172410400 Weak transcription Cortex derived primary cultured neurospheres brain
16 chr2:172388800-172411000 Weak transcription Brain Hippocampus Middle brain
17 chr2:172388800-172413800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr2:172388800-172413800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr2:172388800-172414800 Weak transcription Brain Angular Gyrus brain
20 chr2:172388800-172414800 Weak transcription Brain Cingulate Gyrus brain
21 chr2:172389000-172404000 Weak transcription NH-A brain
22 chr2:172389000-172411000 Weak transcription Fetal Adrenal Gland Adrenal Gland
23 chr2:172392400-172412200 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr2:172394000-172411200 Weak transcription NHLF lung
25 chr2:172396600-172408200 Weak transcription Primary neutrophils fromperipheralblood blood
26 chr2:172396600-172414400 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr2:172396800-172400600 Strong transcription Breast Myoepithelial Primary Cells Breast
28 chr2:172397000-172410200 Weak transcription Placenta Placenta
29 chr2:172397600-172399800 Strong transcription Ovary ovary
30 chr2:172397600-172400000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr2:172397600-172400000 Strong transcription Fetal Lung lung
32 chr2:172397600-172400000 Strong transcription Fetal Muscle Leg muscle
33 chr2:172397600-172405400 Strong transcription HSMMtube muscle
34 chr2:172397800-172400000 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr2:172397800-172400000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr2:172397800-172400000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr2:172397800-172400000 Strong transcription Duodenum Mucosa Duodenum
38 chr2:172397800-172400000 Strong transcription Fetal Muscle Trunk muscle
39 chr2:172397800-172400000 Strong transcription Fetal Stomach stomach
40 chr2:172397800-172400000 Strong transcription Left Ventricle heart
41 chr2:172397800-172400200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr2:172397800-172400200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr2:172397800-172400600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr2:172397800-172400600 Strong transcription NHDF-Ad bronchial
45 chr2:172397800-172401000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr2:172397800-172401400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
47 chr2:172397800-172401400 Strong transcription Adipose Nuclei Adipose
48 chr2:172397800-172401400 Strong transcription Monocytes-CD14+_RO01746 blood
49 chr2:172397800-172401600 Strong transcription Primary hematopoietic stem cells short term culture blood
50 chr2:172397800-172403000 Weak transcription Primary mononuclear cells fromperipheralblood Blood

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Last update: Aug 31, 2015