Variant report
Variant | rs1339870 |
---|---|
Chromosome Location | chr1:222180129-222180130 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11118920 | 0.95[EUR][1000 genomes] |
rs11118930 | 0.87[EUR][1000 genomes] |
rs11118931 | 0.90[EUR][1000 genomes] |
rs12031848 | 0.85[EUR][1000 genomes] |
rs12117316 | 0.80[AFR][1000 genomes];0.95[ASN][1000 genomes] |
rs12139468 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1416896 | 0.96[EUR][1000 genomes] |
rs1470233 | 0.89[EUR][1000 genomes] |
rs2053510 | 0.90[EUR][1000 genomes] |
rs2053511 | 0.92[EUR][1000 genomes] |
rs2053512 | 0.88[EUR][1000 genomes] |
rs2378499 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2584314 | 0.88[EUR][1000 genomes] |
rs2584315 | 0.88[EUR][1000 genomes] |
rs2584316 | 0.88[EUR][1000 genomes] |
rs2584317 | 0.90[EUR][1000 genomes] |
rs2584318 | 0.90[EUR][1000 genomes] |
rs2584319 | 0.90[EUR][1000 genomes] |
rs2584320 | 0.89[EUR][1000 genomes] |
rs2584321 | 0.88[EUR][1000 genomes] |
rs2584322 | 0.85[EUR][1000 genomes] |
rs2584323 | 0.90[EUR][1000 genomes] |
rs2584324 | 0.90[EUR][1000 genomes] |
rs2584329 | 0.88[EUR][1000 genomes] |
rs2790744 | 0.88[EUR][1000 genomes] |
rs2790745 | 0.88[EUR][1000 genomes] |
rs2790746 | 0.87[EUR][1000 genomes] |
rs2790747 | 0.87[EUR][1000 genomes] |
rs2790748 | 0.89[EUR][1000 genomes] |
rs2800848 | 0.82[EUR][1000 genomes] |
rs2800849 | 0.89[EUR][1000 genomes] |
rs2800859 | 0.94[YRI][hapmap] |
rs2800860 | 1.00[JPT][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.94[ASN][1000 genomes] |
rs2800861 | 0.87[EUR][1000 genomes] |
rs2800865 | 0.88[EUR][1000 genomes] |
rs2800866 | 0.88[EUR][1000 genomes] |
rs2800867 | 0.88[EUR][1000 genomes] |
rs2970199 | 0.84[AFR][1000 genomes];0.96[ASN][1000 genomes] |
rs3014719 | 0.86[EUR][1000 genomes] |
rs56120858 | 0.96[EUR][1000 genomes] |
rs61823931 | 0.89[EUR][1000 genomes] |
rs6604697 | 0.86[EUR][1000 genomes] |
rs6677832 | 0.96[EUR][1000 genomes] |
rs7538392 | 0.90[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1014333 | chr1:222131785-222245578 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | esv1009077 | chr1:222176979-222180320 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:222169200-222184000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr1:222180000-222181000 | Enhancers | Liver | Liver |
3 | chr1:222180000-222181400 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |