Variant report

Variant	rs6604697
Chromosome Location	chr1:222215038-222215039
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11118920	0.86[EUR][1000 genomes]
rs11118930	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118931	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12031848	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12137305	0.96[ASN][1000 genomes]
rs12139468	0.86[EUR][1000 genomes]
rs1339870	0.86[EUR][1000 genomes]
rs1416896	0.87[EUR][1000 genomes]
rs1470233	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2053510	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2053511	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2053512	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2378499	0.87[EUR][1000 genomes]
rs2584314	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2584315	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2584316	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2584317	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2584318	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2584319	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2584320	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2584321	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2584322	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2584323	0.90[EUR][1000 genomes]
rs2584324	0.90[EUR][1000 genomes]
rs2584329	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2790744	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2790745	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2790746	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2790747	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2790748	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2800848	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2800849	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2800861	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2800865	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2800866	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2800867	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3014719	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56120858	0.87[EUR][1000 genomes]
rs61823931	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6677832	0.87[EUR][1000 genomes]
rs7538392	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs996854	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014333	chr1:222131785-222245578	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222195000-222216000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:222204200-222216600	Weak transcription	Aorta	Aorta
3	chr1:222207000-222217200	Enhancers	Fetal Heart	heart
4	chr1:222211200-222215200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:222211200-222216600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:222211400-222215200	Weak transcription	Osteobl	bone
7	chr1:222211400-222216800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:222211800-222215200	Weak transcription	HSMMtube	muscle
9	chr1:222212800-222215200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:222212800-222216600	Weak transcription	Liver	Liver
11	chr1:222214000-222215200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:222214000-222216200	Weak transcription	Psoas Muscle	Psoas
13	chr1:222214000-222216600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr1:222214000-222216600	Weak transcription	Right Atrium	heart
15	chr1:222214000-222216800	Weak transcription	Fetal Brain Male	brain
16	chr1:222214200-222216400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr1:222214400-222215800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr1:222214400-222216600	Weak transcription	Left Ventricle	heart
19	chr1:222214600-222216200	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:222214600-222216200	Weak transcription	Fetal Muscle Leg	muscle
21	chr1:222214600-222216600	Weak transcription	Right Ventricle	heart
22	chr1:222214600-222216600	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr1:222214600-222218000	Enhancers	Skeletal Muscle Male	skeletal muscle

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