Variant report

Variant	rs13400011
Chromosome Location	chr2:173036081-173036082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10183800	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10186626	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389254	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432384	1.00[ASN][1000 genomes]
rs62182093	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6433333	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6706297	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6718762	0.95[ASN][1000 genomes]
rs6738987	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751639	1.00[ASN][1000 genomes]
rs6751644	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7607929	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875413	chr2:173009413-173097343	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv2762294	chr2:173028656-173071270	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173026400-173037400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:173032400-173036800	Enhancers	Duodenum Mucosa	Duodenum
3	chr2:173033200-173037000	Weak transcription	Colonic Mucosa	Colon
4	chr2:173034000-173037400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr2:173034200-173036800	Weak transcription	Stomach Mucosa	stomach
6	chr2:173034400-173036800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:173034400-173037400	Weak transcription	HSMMtube	muscle
8	chr2:173034600-173036600	Weak transcription	Fetal Intestine Large	intestine
9	chr2:173034600-173036600	Weak transcription	Fetal Intestine Small	intestine
10	chr2:173034600-173036800	Weak transcription	Pancreas	Pancrea
11	chr2:173034800-173036800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr2:173035000-173037000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr2:173035800-173036800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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