Variant report

Variant	rs13432384
Chromosome Location	chr2:173038064-173038065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:173036862..173038555-chr2:173090305..173091655,7	MCF-7	breast:
2	chr2:173036066..173038530-chr2:173327913..173329630,2	MCF-7	breast:
3	chr2:173037340..173040256-chr2:173329062..173331322,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232788	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10183800	0.95[ASN][1000 genomes]
rs10186626	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389254	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13400011	1.00[ASN][1000 genomes]
rs62182093	0.93[ASN][1000 genomes]
rs6433333	0.95[ASN][1000 genomes]
rs6706297	1.00[ASN][1000 genomes]
rs6718762	0.95[ASN][1000 genomes]
rs6738987	1.00[ASN][1000 genomes]
rs6751639	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751644	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875413	chr2:173009413-173097343	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv2762294	chr2:173028656-173071270	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173037000-173038400	Active TSS	H9 Cell Line	embryonic stem cell
2	chr2:173037200-173038200	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr2:173037200-173038200	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr2:173037200-173038200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:173037800-173038200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:173037800-173038200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr2:173037800-173038200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr2:173037800-173038200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr2:173037800-173038200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:173037800-173038200	Active TSS	Colonic Mucosa	Colon
11	chr2:173037800-173038200	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr2:173037800-173038200	Enhancers	HMEC	breast
13	chr2:173037800-173038200	Enhancers	HSMMtube	muscle
14	chr2:173037800-173038200	Enhancers	NH-A	brain
15	chr2:173037800-173038200	Enhancers	NHDF-Ad	bronchial
16	chr2:173037800-173038400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
17	chr2:173037800-173038400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
18	chr2:173037800-173038400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr2:173037800-173038400	Bivalent Enhancer	Fetal Thymus	thymus
20	chr2:173037800-173043000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr2:173038000-173038200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr2:173038000-173038200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr2:173038000-173038200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr2:173038000-173038200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
25	chr2:173038000-173038200	Enhancers	Fetal Intestine Small	intestine
26	chr2:173038000-173038400	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr2:173038000-173038400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr2:173038000-173038400	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr2:173038000-173038400	Enhancers	Primary hematopoietic stem cells	blood
30	chr2:173038000-173038400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr2:173038000-173038400	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr2:173038000-173038400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr2:173038000-173038400	Enhancers	NHEK	skin
34	chr2:173038000-173038600	Enhancers	H1 Cell Line	embryonic stem cell
35	chr2:173038000-173038800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
36	chr2:173038000-173042600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr2:173038000-173043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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