Variant report

Variant	rs13400887
Chromosome Location	chr2:53354737-53354738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1077943	1.00[AMR][1000 genomes]
rs11896600	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17044057	1.00[AMR][1000 genomes]
rs2163335	1.00[AMR][1000 genomes]
rs6713856	1.00[AMR][1000 genomes]
rs6734253	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6745734	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9677553	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520722	chr2:53039770-53421015	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012463	chr2:53187151-53377118	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1011118	chr2:53328397-53375220	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53338400-53362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:53353600-53355000	Enhancers	Fetal Intestine Small	intestine
3	chr2:53353600-53355200	Enhancers	Fetal Intestine Large	intestine
4	chr2:53354000-53354800	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr2:53354400-53354800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:53354400-53354800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:53354400-53355000	Enhancers	HMEC	breast
8	chr2:53354400-53356000	Weak transcription	Brain Germinal Matrix	brain
9	chr2:53354600-53354800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:53354600-53356600	Weak transcription	NHEK	skin
11	chr2:53354600-53360200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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