Variant report

Variant	rs6745734
Chromosome Location	chr2:53332280-53332281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1077943	1.00[AMR][1000 genomes]
rs11896600	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13400887	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17044057	1.00[AMR][1000 genomes]
rs2163335	1.00[AMR][1000 genomes]
rs6713856	1.00[AMR][1000 genomes]
rs6734253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73931754	1.00[AMR][1000 genomes]
rs9677553	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520722	chr2:53039770-53421015	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012463	chr2:53187151-53377118	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv874141	chr2:53263644-53352630	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1011118	chr2:53328397-53375220	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53330600-53332400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:53330600-53332400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:53330600-53332400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:53330600-53332400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr2:53330800-53332400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:53331000-53332400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr2:53331000-53332400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr2:53331000-53332400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:53331400-53332400	Enhancers	HMEC	breast
10	chr2:53331600-53332400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr2:53331600-53337400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:53331800-53338000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr2:53332000-53332400	Active TSS	Rectal Mucosa Donor 31	rectum
14	chr2:53332200-53336800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr2:53332200-53337600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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