Variant report

Variant	rs13401687
Chromosome Location	chr2:35755613-35755614
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10167615	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10171178	0.98[ASN][1000 genomes]
rs10179444	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10190386	0.88[ASN][1000 genomes]
rs10198577	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1115263	0.97[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1115264	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12712447	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13007143	0.80[ASN][1000 genomes]
rs13025220	0.95[AMR][1000 genomes]
rs13031827	0.95[AMR][1000 genomes]
rs13031938	0.97[AMR][1000 genomes]
rs13384218	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13421752	0.82[ASN][1000 genomes]
rs13426618	0.97[AMR][1000 genomes]
rs1347948	0.97[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1371420	0.97[AMR][1000 genomes]
rs1439709	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1960283	0.82[ASN][1000 genomes]
rs2372003	0.82[ASN][1000 genomes]
rs2372011	0.97[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28534894	0.97[AMR][1000 genomes]
rs34925908	0.82[ASN][1000 genomes]
rs35339230	0.81[ASN][1000 genomes]
rs35404436	0.82[ASN][1000 genomes]
rs36108127	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6543952	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6543955	0.82[ASN][1000 genomes]
rs6543959	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6705172	0.82[AMR][1000 genomes]
rs6716879	0.97[AMR][1000 genomes]
rs6737642	0.82[ASN][1000 genomes]
rs6739508	0.82[ASN][1000 genomes]
rs7557364	0.82[ASN][1000 genomes]
rs7557690	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7573212	0.87[AMR][1000 genomes]
rs7579592	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7597745	0.82[ASN][1000 genomes]
rs7597849	0.82[ASN][1000 genomes]
rs8179828	0.87[AMR][1000 genomes]
rs9308969	0.82[ASN][1000 genomes]
rs934972	0.97[AMR][1000 genomes]
rs9749688	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010722	chr2:35072575-35950219	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv519522	chr2:35425529-35861883	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1008651	chr2:35469467-35896486	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv999139	chr2:35483033-35860024	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv535636	chr2:35483033-35860024	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	nsv873848	chr2:35641532-35973963	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv949472	chr2:35709203-36447481	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv518450	chr2:35711861-35779358	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1009123	chr2:35728920-36412880	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv535639	chr2:35728920-36412880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv998313	chr2:35731937-36422991	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv535640	chr2:35731937-36422991	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:35755000-35757400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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