Variant report

Variant	rs13401734
Chromosome Location	chr2:152023495-152023496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:152020947..152023552-chr2:152026485..152029371,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10173695	1.00[YRI][hapmap]
rs10178102	1.00[AMR][1000 genomes]
rs10189598	1.00[AMR][1000 genomes]
rs10191465	1.00[YRI][hapmap]
rs10202421	1.00[AMR][1000 genomes]
rs10469704	1.00[AMR][1000 genomes]
rs12328560	1.00[YRI][hapmap]
rs13383738	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13401756	1.00[YRI][hapmap]
rs13412724	1.00[AMR][1000 genomes]
rs13412781	1.00[YRI][hapmap]
rs13424594	1.00[AMR][1000 genomes]
rs13431998	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57977434	1.00[AMR][1000 genomes]
rs59237589	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6705615	1.00[YRI][hapmap]
rs7564559	1.00[AMR][1000 genomes]
rs7577551	1.00[AMR][1000 genomes]
rs7589443	1.00[AMR][1000 genomes]
rs7589444	1.00[AMR][1000 genomes]
rs9989812	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv834417	chr2:151980473-152154950	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv1014936	chr2:152019809-152118479	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1012891	chr2:152019809-152306897	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152019600-152024000	Enhancers	Brain Germinal Matrix	brain
2	chr2:152022800-152023600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:152023000-152023800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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