Variant report

Variant	rs59237589
Chromosome Location	chr2:152033730-152033731
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10178102	1.00[AMR][1000 genomes]
rs10189598	1.00[AMR][1000 genomes]
rs10202421	1.00[AMR][1000 genomes]
rs10469704	1.00[AMR][1000 genomes]
rs13383738	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13401734	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13412724	1.00[AMR][1000 genomes]
rs13424594	1.00[AMR][1000 genomes]
rs13431998	1.00[AMR][1000 genomes]
rs57977434	1.00[AMR][1000 genomes]
rs7564559	1.00[AMR][1000 genomes]
rs7577551	1.00[AMR][1000 genomes]
rs7589443	1.00[AMR][1000 genomes]
rs7589444	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv834417	chr2:151980473-152154950	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv1014936	chr2:152019809-152118479	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1012891	chr2:152019809-152306897	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	nsv1013484	chr2:152028515-152473913	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv535983	chr2:152028515-152473913	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152031200-152035200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr2:152031400-152035000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:152032000-152034400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:152032200-152034000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:152032200-152035200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:152032600-152038800	Weak transcription	Brain Germinal Matrix	brain
7	chr2:152032800-152034800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr2:152033000-152034200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr2:152033000-152035200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:152033200-152034800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr2:152033600-152033800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr2:152033600-152034800	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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