Variant report

Variant	rs13402460
Chromosome Location	chr2:172416749-172416750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13402229	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13402449	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13404964	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16859543	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28427085	0.85[AMR][1000 genomes]
rs525	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976201	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832950	chr2:172283513-172488111	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172386400-172419800	Weak transcription	Lung	lung
2	chr2:172411800-172419000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:172412400-172417400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:172412600-172416800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr2:172412600-172420000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr2:172412800-172416800	Weak transcription	Ovary	ovary
7	chr2:172412800-172417200	Weak transcription	Brain Hippocampus Middle	brain
8	chr2:172412800-172417600	Weak transcription	NHDF-Ad	bronchial
9	chr2:172412800-172418800	Weak transcription	NHLF	lung
10	chr2:172412800-172421200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:172412800-172421200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:172413000-172420800	Weak transcription	Aorta	Aorta
13	chr2:172413400-172418400	Weak transcription	Left Ventricle	heart
14	chr2:172413600-172417200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr2:172413600-172422400	Weak transcription	Adipose Nuclei	Adipose
16	chr2:172414200-172420000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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