Variant report

Variant	rs16859543
Chromosome Location	chr2:172420197-172420198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13402229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13402449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13402460	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13404964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28427085	0.85[AMR][1000 genomes]
rs525	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832950	chr2:172283513-172488111	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172412800-172421200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:172412800-172421200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:172413000-172420800	Weak transcription	Aorta	Aorta
4	chr2:172413600-172422400	Weak transcription	Adipose Nuclei	Adipose
5	chr2:172419800-172420200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr2:172420000-172420200	Enhancers	Gastric	stomach
7	chr2:172420000-172420200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
8	chr2:172420000-172420400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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