Variant report

Variant	rs13403749
Chromosome Location	chr2:30335918-30335919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11886753	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12463847	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12469080	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13397907	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17009192	0.91[EUR][1000 genomes]
rs2084335	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3087895	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3754535	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4951983	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4952095	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4952096	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4952098	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4952102	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55735005	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59074474	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7567202	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30327400-30337600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:30332000-30336200	Weak transcription	HepG2	liver
3	chr2:30333200-30336000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr2:30333400-30336400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:30333600-30336200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:30333600-30336200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:30334000-30336200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:30334200-30336200	Weak transcription	NHEK	skin
9	chr2:30334400-30336000	Weak transcription	HMEC	breast
10	chr2:30334400-30336000	Weak transcription	NHLF	lung
11	chr2:30335400-30337400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:30335600-30336200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:30335600-30337800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:30335600-30338000	Enhancers	NH-A	brain
15	chr2:30335600-30338400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:30335800-30336600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr2:30335800-30337800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr2:30335800-30338800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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