Variant report

Variant	rs17009192
Chromosome Location	chr2:30398854-30398855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11886753	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12463847	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12469080	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13397907	0.93[EUR][1000 genomes]
rs13403749	0.91[EUR][1000 genomes]
rs2084335	0.89[EUR][1000 genomes]
rs3087895	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3754535	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4951983	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4952095	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4952096	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4952098	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4952102	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4952105	0.84[ASN][1000 genomes]
rs55735005	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59074474	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7567202	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1002657	chr2:30339312-30516535	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30382400-30400400	Weak transcription	Left Ventricle	heart
2	chr2:30382400-30400600	Weak transcription	Lung	lung
3	chr2:30382400-30400600	Weak transcription	Spleen	Spleen
4	chr2:30383600-30400800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr2:30388400-30401000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:30388800-30401400	Weak transcription	HSMMtube	muscle
7	chr2:30388800-30407200	Weak transcription	Brain Hippocampus Middle	brain
8	chr2:30390800-30399200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr2:30395800-30400800	Weak transcription	Fetal Heart	heart
10	chr2:30396800-30400600	Weak transcription	Right Ventricle	heart
11	chr2:30397800-30401600	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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