Variant report

Variant	rs4952105
Chromosome Location	chr2:30407284-30407285
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1137288	0.85[JPT][hapmap]
rs11898846	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12469080	0.88[ASN][1000 genomes]
rs17009192	0.84[ASN][1000 genomes]
rs3754535	1.00[ASW][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap]
rs4264597	0.82[CHB][hapmap]
rs4951983	1.00[ASW][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap]
rs4952098	1.00[ASW][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap]
rs4952102	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs7567202	0.87[CHB][hapmap];0.92[JPT][hapmap]
rs7600457	0.85[JPT][hapmap]
rs7603324	0.85[JPT][hapmap]
rs966498	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1002657	chr2:30339312-30516535	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv873768	chr2:30403762-30436249	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv438281	chr2:30406902-30418294	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30402400-30407800	Weak transcription	Adipose Nuclei	Adipose
2	chr2:30403400-30408200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:30405000-30409400	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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